Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs2271740 chr2:169078528 A/G 4.2E-6 368 19.58 21.33 13.87 KM Plot
LIHC rs2271741 chr2:169078534 A/C 4.2E-6 368 19.58 21.33 13.87 KM Plot
LIHC rs2287087 chr2:37077459 A/C 1.56E-5 367 20.45 12.85 8.73 KM Plot
LIHC rs2369700 chr16:1374513 G/A 6.83E-6 356 1.87 20.5 19.53 KM Plot
LIHC rs2517014 chr8:16848399 A/G 4.07E-13 368 0.63 21.73 18.6 KM Plot
LIHC rs2540939 chr2:37065320 G/A 9.93E-6 364 20.4 12.85 8.73 KM Plot
LIHC rs2540940 chr2:37065154 G/A 1.17E-5 364 20.27 12.85 8.73 KM Plot
LIHC rs2540941 chr2:37065004 C/T 9.93E-6 364 20.4 12.85 8.73 KM Plot
LIHC rs2541002 chr2:37234587 A/G 1.11E-5 360 20.4 14.75 8.73 KM Plot
LIHC rs260638 chr2:109523038 G/T 4.27E-6 362 11.23 22.43 19.37 KM Plot
LIHC rs2717496 chr2:37084717 T/C 1.67E-5 367 8.73 13.53 20.5 KM Plot
LIHC rs2717518 chr2:37104515 C/A 9.32E-6 365 8.73 13.53 20.5 KM Plot
LIHC rs276684 chr6:76427065 A/G 5.92E-5 360 12.15 18.63 20.6 KM Plot
LIHC rs28579121 chr5:74972373 G/C 7.58E-9 366 19.53 20.48 4.25 KM Plot
LIHC rs28663529 chr2:37164502 G/A 9.95E-6 365 20.9 12.17 8.73 KM Plot